PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012546
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Dof
Protein Properties Length: 181aa    MW: 19398.1 Da    PI: 8.6005
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58667072PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.28.9e-392886361
     zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                ++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GGalr++PvGgg+rkn k+
  Lsa012546 28 PEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGALRDIPVGGGTRKNAKR 86
               57899***************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-282485IPR003851Zinc finger, Dof-type
PfamPF027012.3E-333085IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3573185IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MPSDSSDQRR TTTAKNHQVG LGAPPSEPEH LPCPRCDSTN TKFCYYNNYN FSQPRHFCKS  60
CRRYWTHGGA LRDIPVGGGT RKNAKRARVS TATSHDNSSV SSGIEYHHIS ATSTTTATTS  120
VASVPILMSF AGDHGGSGNC GSFTSLLSNT QSPGLYGLDQ DLSFGLGRTI WPFSSIGDGV  180
X
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852923.17e-63PREDICTED: dof zinc finger protein DOF3.4-like
SwissprotQ390885e-45DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBLA0A103Y5123e-79A0A103Y512_CYNCS; Zinc finger, Dof-type
STRINGPGSC0003DMT4000261379e-60(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.12e-44OBF binding protein 1