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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa012546 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | Dof | ||||||||
Protein Properties | Length: 181aa MW: 19398.1 Da PI: 8.6005 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.2 | 8.9e-39 | 28 | 86 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GGalr++PvGgg+rkn k+ Lsa012546 28 PEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGALRDIPVGGGTRKNAKR 86 57899***************************************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-28 | 24 | 85 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-33 | 30 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.357 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 33 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MPSDSSDQRR TTTAKNHQVG LGAPPSEPEH LPCPRCDSTN TKFCYYNNYN FSQPRHFCKS 60 CRRYWTHGGA LRDIPVGGGT RKNAKRARVS TATSHDNSSV SSGIEYHHIS ATSTTTATTS 120 VASVPILMSF AGDHGGSGNC GSFTSLLSNT QSPGLYGLDQ DLSFGLGRTI WPFSSIGDGV 180 X |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012852923.1 | 7e-63 | PREDICTED: dof zinc finger protein DOF3.4-like | ||||
Swissprot | Q39088 | 5e-45 | DOF34_ARATH; Dof zinc finger protein DOF3.4 | ||||
TrEMBL | A0A103Y512 | 3e-79 | A0A103Y512_CYNCS; Zinc finger, Dof-type | ||||
STRING | PGSC0003DMT400026137 | 9e-60 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 2e-44 | OBF binding protein 1 |